Crumb Top Baking

  • Summer Recipes
  • Recipe Index
  • About
  • Subscribe
menu icon
go to homepage
  • Summer Recipes
  • Recipe Index
  • About
  • Subscribe
search icon
Homepage link
  • Summer Recipes
  • Recipe Index
  • About
  • Subscribe
×
Home » Recipes » Desserts

Almond Flour Black Forest Cupcakes

Last Updated: Jul 14, 2026 by Leanne Combden

Pinterest image for almond flour black forest cupcakes showing a close up of one of the cupcakes.
Pinterest image showing 2 different pictures of black forest cupcakes.
Pinterest image for almond flour black forest cupcakes showing a close up of one of the cupcakes.
↓ Jump to Recipe

Let's indulge in these decadent, gluten-free Almond Flour Black Forest Cupcakes! They're made with my favorite almond flour chocolate cupcakes and a homemade cherry filling, then topped with a light whipped cream cheese frosting, chocolate shavings and a fresh cherry.

If you love cherries and chocolate together, you'll also want to try my homemade, no-churn cherry chip ice cream!

Close up of a cupcake topped with a fresh cherry.

Want to save this recipe for later?

Enter your email address and I'll send it straight to your inbox. You'll also receive new recipes from me regularly!

Quick Look: Almond Flour Black Forest Cupcakes

  • ⏱ Prep Time: 25 minutes
  • 👩🏻‍🍳 Bake Time: 20 minutes
  • 🆒 Cooling Time: 1 hour
  • ⏳ Total Time: 1 hour 45 minutes
  • 🧁 Servings: 12 cupcakes
  • ⚡ Calories: 392 per cupcake
  • 🍽 Diet: gluten-free
  • 🔥 Flavor/texture: soft and fluffy with a light, whipped frosting; flavors are rich chocolate, sweet almond and cherry.
  • 👌 Difficulty: even though there are different components to the recipe, the cupcakes are not difficult to make.
  • ❤️ Why you'll love: Decadent but not too rich or sweet; easy homemade cherry filling and stable whipped cream frosting that lasts for days.

SUMMARIZE & SAVE THIS CONTENT ON

ChatGPT
Google AI
Perplexity
Grok
Add us as a trusted site on Google

Why you'll love these cupcakes

Every cherry season, my first bake is always some version of a black forest cake or cupcake. This year, inspired by my lemon poppy seed cupcakes, I decided to create a gluten-free black forest cupcake. By combining my go-to chocolate almond flour cupcake recipe, my homemade cherry pie filling and my favorite whipped topping, I created one of my favorite cupcakes to date!

Here's why you need to bake these:

  1. Decadent without being too rich or sweet. By not going overboard on sugar, the deep chocolate, sweet almond and vibrant cherry flavors truly shine in these cupcakes.
  2. Soft and fluffy texture. Using almond flour doesn't mean dense cupcakes. By whipping the eggs and sugar first, you get a light and fluffy crumb.
  3. Simple homemade cherry filling. Skip the canned cherry pie filling! My filling recipe isn't too sweet and uses fresh or frozen cherries chopped small for the perfect bite. (It's the same cherry filling I use for my almond cherry bars, I just halved it for the cupcakes).
  4. Stable whipped cream topping. I topped these cupcakes with gelatin-free whipped frosting, which was adapted from my whipped cream cheese frosting recipe. It stays perfectly fluffy while holding up to all the chocolate shavings and cherry garnishes.
Table of Contents
  • Quick Look: Almond Flour Black Forest Cupcakes
  • Why you'll love these cupcakes
  • Ingredient notes
  • How to make gluten-free black forest cupcakes with almond flour
  • Measuring your ingredients
  • Expert tips
  • Almond flour black forest cupcakes FAQs
  • Other recommended cupcake recipes
  • 📖 Recipe

Ingredient notes

Ingredients to make almond flour black forest cupcakes arranged individually and labeled.
  • Cherries - We're using fresh sweet cherries for the filling. If you prefer sour cherries, you'll need to add more sugar to the filling as they're more tart than sweet.
  • Almond flour - I recommend using fine blanched almond flour which results in a softer crumb for cupcakes compared to almond meal. (It's the flour I use in most of my gluten-free almond flour recipes). If you use almond meal, I can't guarantee that the cupcakes will be as soft and fluffy.
  • Cocoa - I used Dutch-processed cocoa as it adds a rich, intense chocolate flavor to these cupcakes. I haven't tested this recipe with natural cocoa. (Don't forget to sift your cocoa if it's lumpy).
  • Espresso powder - To enhance the chocolate flavor, I added a little espresso powder to the cupcake batter. Feel free to leave it out if you wish.
  • Sugar - You can use light or dark brown sugar for the cupcake batter.
  • Maple syrup - For additional sweetness and moisture, I also add some maple syrup to the batter. (It's also one of the tricks I use to keep my almond flour chocolate cake sweet and moist).
  • Eggs - You'll need 4 large eggs, which helps gluten-free cupcakes rise and gives them structure.
  • Almond extract - This enhances the cherry flavor in the filling and adds a sweet, cherry-like flavor to the frosting.
  • Heavy whipping cream - For the frosting, you'll need cold, heavy whipping cream that's at least 35% milk fat.
  • Cream cheese - You'll need 6 tablespoons of full fat cream cheese to help stabilize the whipped cream and add a slightly tangy flavor. You don't need to bring it to room temperature. Cold cream cheese works best in the frosting.

How to make gluten-free black forest cupcakes with almond flour

Cherry filling ingredients in a small saucepan with a spatula inserted into it.

Step 1: Add the cherry filling ingredients to a small saucepan and stir to combine.

Cherry filling cooked in a small saucepan.

Step 2: Heat over medium heat until the mixture thickens, stirring frequently so it doesn't burn.

Almond flour, cocoa, baking soda, salt and espresso powder whisked together in a glass bowl.

Step 3: Whisk together the almond flour, cocoa, espresso powder, baking soda and salt.

Brown sugar and eggs whipped together in a glass bowl.

Step 4: In a large bowl, use an electric mixer on medium-high speed to beat together the eggs and brown sugar for about 30 seconds.

All of the wet ingredients beaten together in a glass bowl.

Step 5: Add in the maple syrup, oil and vanilla. Mix for another 15 seconds, or until combined.

Chocolate cupcake batter in a large glass bowl.

Step 6: Add the dry ingredients to the wet mixture, and mix on low speed until just combined.

Chocolate cupcake batter added to a cupcake pan with parchment liners.

Step 7: Divide the batter into a 12-cavity cupcake pan (with liners), filling them about ¾ full.

Baked chocolate cupcakes in a pink cupcake pan.

Step 8: Bake at 325F for 18-22 minutes. Let cool for 10 minutes in the pan, then transfer to a wire rack to cool completely.

Centers of each cupcake scooped out.

Step 9: Cut a circle into the top of each cupcake, about 1-inch deep. (You can use a knife or a cupcake corer, or even a piping tip).

Frosting whipped together in a bowl.

Step 10: Beat together the cold cream cheese and almond extract. Then, beat in the powdered sugar until smooth, and then gradually add the whipping cream. Increase the speed to medium-high and beat until stiff peaks form.

Cherry filling piped into cupcake centers.

Step 11: Spoon or pipe the cooled cherry filling into each cupcake. (You'll use about half of the filling).

Frosted cupcakes on a wire rack, topped with chocolate shavings and cherries.

Step 12: Pipe the frosting on the cupcakes, leaving a center in the middle. Spoon or pipe in the rest of the cherry filling and top with chocolate shavings and a cherry.

Measuring your ingredients

For convenience, US cup measurements are included in the recipe card for this recipe. To ensure greater accuracy, however, weight and volume measurements are also provided. So, if you see grams (g), you'll want to use a kitchen scale to weigh your ingredients, and if you see milliliters (ml), you'll want to use a liquid measuring cup. Smaller quantities of ingredients are provided in teaspoons and tablespoons.

Expert tips

  • Chop up cherries. I usually keep cherries whole or cut them in half for recipes, like this cherry galette. But, since we're adding the cherry filling to a small hole cut out in a cupcake, I like to chop up the cherries. They also cook a little faster this way.
  • Let the cherry filling cool. You don't want to add warm filling to the cupcakes as it will cause the whipped cream topping to wilt or melt.
  • Piping bag. Not only do I use a piping bag for the frosting, but I also use one for the cherry filling. For me, it's easier and less messy to pipe the cherry filling into the cupcakes instead of spooning it in. You can definitely use a spoon if you prefer.
  • Gradually add the heavy cream. When making the frosting, gradually add the heavy cream to the cream cheese mixture. This will ensure they blend together smoothly before you start whipping the frosting into stiff peaks.
  • Don't over whip the frosting. Heavy cream can thicken and curdle quickly, so keep an eye on the frosting in the mixer. Once it hits stiff peaks, the frosting is ready.
  • Chocolate shavings. You can buy chocolate shavings or curls, but I just use a vegetable peeler and shave some chocolate off a dark chocolate bar.
Black forest cupcakes arranged on a pink surface with chocolate shavings scattered around.

Almond flour black forest cupcakes FAQs

Why did my cupcakes sink in the middle?

If the cupcake pan is too full, the cupcakes won't have room to expand as they bake and may deflate when you take them out of the oven. It could also be because the batter was over mixed. This will aerate the batter too much and create a sunken cupcake. (I troubleshoot in more detail why almond flour cupcakes sink in this recipe for vanilla almond flour cupcakes).

Can I use frozen cherries for the cherry filling?

I used fresh cherries, but frozen works too. And, as a bonus, they're usually already pitted!

Why is my whipped cream cheese frosting runny or grainy?

If the cream you're using is less than 35% milk fat or isn't cold enough, the frosting will end up runny. If it's high fat and cold, then you may just need to whip the cream for longer or on a higher speed. A grainy appearance may be because your cream cheese was too warm. Use cold cream cheese so it mixes smoothly with the cold cream.

Can I use a different frosting for these cupcakes?

If you prefer a thicker and sweeter frosting, you can try my vanilla sour cream frosting. Chocolate frosting would also work well on these cupcakes and my sour cream chocolate frosting is thick, rich and perfectly pipe-able!

What's the best way to store these black forest cupcakes and how long will they last?

Since they're topped with a whipped cream frosting, these cupcakes should be stored in a sealed container in the fridge. In my experience, they will stay moist and tender for 5-6 days. The whipped topping will also stay creamy and retain it's shape without wilting. (Note that the cherry filling will bleed a bit onto the frosting).

Cupcake cut in half on a parchment cupcake liner, showing the cherry filling inside.

Other recommended cupcake recipes

  • Side view of an almond flour chocolate cupcake with a bite taken out.
    Almond Flour Chocolate Cupcakes
  • Gluten-free carrot cake cupcake on a cupcake liner with a bite taken out.
    Gluten-Free Carrot Cake Cupcakes
  • Angled view of vegan pineapple coconut cupcakes on a black wire rack.
    Pineapple Coconut Cupcakes (Vegan)
  • Close up view of a chocolate zucchini cupcake with a bite taken out of it.
    Chocolate Zucchini Cupcakes

HUNGRY FOR MORE?  Sign up for our newsletter and follow Crumb Top Baking on Instagram, Pinterest and Facebook!

If you make this recipe, please leave a review and rating below to let me know what you think. If you have a question, drop that below too!

📖 Recipe

Almond flour black forest cupcakes topped with fresh cherries and chocolate shavings.

Almond Flour Black Forest Cupcakes

These gluten-free Almond Flour Black Forest Cupcakes are made with almond flour chocolate cupcakes, homemade cherry filling and a stable whipped cream frosting!
No ratings yet
Print Pin
Prep Time: 25 minutes minutes
Cook Time: 20 minutes minutes
Cooling Time: 1 hour hour
Total Time: 1 hour hour 45 minutes minutes
Servings: 12 cupcakes
Author: Leanne Combden

Ingredients

For the cherry filling:

  • 1 ½ cups (235 g) fresh sweet cherries, pitted and chopped into pieces, (frozen also works)
  • ¼ cup (60 ml) water
  • 2 tablespoons (30 g) granulated sugar
  • 1 tablespoon cornstarch
  • ½ tablespoon fresh lemon juice
  • ½ teaspoon almond extract

For the cupcakes:

  • 2 cups (208 g) fine blanched almond flour
  • ½ cup (50 g) Dutch-processed cocoa, sifted if lumpy
  • 1 teaspoon espresso powder
  • ½ teaspoon baking soda
  • ¼ teaspoon fine sea salt
  • 4 large eggs, room temperature
  • ½ cup (90 g) brown sugar, loosely packed
  • ¼ cup (60 ml) olive oil
  • ¼ cup (60 ml) maple syrup
  • 2 teaspoons vanilla extract

For the whipped cream frosting:

  • 6 tablespoons (85 g) full fat cream cheese, cold and cubed
  • ½ teaspoon almond extract
  • 1 cup (120 g) powdered sugar, sifted if lumpy
  • ¾ cup (180 ml) heavy whipping cream, cold
  • ¼ cup chocolate shavings, for topping
  • 12 fresh cherries, for topping

Instructions

Prevent your screen from going dark

Make the cherry filling:

  • Add the cherry filling ingredients to a small saucepan and stir to combine.
  • Heat over medium heat until the cherry mixture thickens, stirring frequently so it doesn't burn. Set aside to cool.

Make the cupcakes:

  • Preheat oven to 325F and line a 12-cavity cupcake pan with parchment liners.
  • In a large bowl, whisk together the almond flour, cocoa, espresso powder, baking soda and salt.
  • In a medium-sized bowl, use an electric mixer set to medium-high speed to beat together the eggs and brown sugar for 30 seconds until the mixture is frothy with bubbles on top.
  • Add the oil, maple syrup and vanilla and beat for another 15 seconds until just combined.
  • Add the dry ingredients to the wet mixture, and mix on low speed until just combined. Don't overmix.
  • Portion the batter out into the cupcake liners, filling each ¾ full. Don't overfill.
  • Gently tap the bottom of the pan off a hard surface to help remove any air bubbles.
  • Bake for 18-22 minutes, or until a toothpick inserted into the middle of a cupcake comes out clean.
  • Let cool for 10 minutes before transferring the cupcakes to a wire rack to fully cool.
  • Cut a circle into the top of each cupcake, about 1-inch deep. (You can use a knife, a cupcake corer or a piping tip).
  • Spoon or pipe some of the cherry filling into each of the cupcakes. (You'll use about half of the filling).

Make the whipped cream frosting:

  • Using an electric mixer with the whisk attachment, whip together the cold, cubed cream cheese and almond extract and then beat in the powdered sugar. The mixture will resemble runny cream cheese frosting.
  • On low speed, gradually add in the cold whipping cream until it's mixed into the cream cheese mixture. Increase the speed to medium-high and beat until stiff peaks form.
  • Pipe the frosting onto the cupcakes, leaving a center in the middle and then spoon or pipe in the remainder of the cherry filling.
  • Top with chocolate shavings and a fresh cherry.

Notes

  1. Chop up cherries. I usually keep cherries whole or cut them in half for recipes. But, since we're adding the cherry filling to cupcakes, I like to chop up the cherries. They also cook a little faster this way.
  2. Let the cherry filling cool. You don't want to add warm filling to the cupcakes as it will cause the whipped cream topping to wilt or melt.
  3. Piping bag. For me, it's easier and less messy to pipe the cherry filling into the cupcakes instead of spooning it in. You can definitely use a spoon if you prefer.
  4. Gradually add the heavy cream. When making the frosting, gradually adding the heavy cream to the cream cheese mixture will ensure they blend together smoothly before you start whipping the frosting into stiff peaks.
  5. Don't over whip the frosting. Heavy cream can thicken and curdle quickly, so keep an eye on the frosting in the mixer. Once it hits stiff peaks, the frosting is ready.
  6. Chocolate shavings. You can buy chocolate shavings or curls, but I just use a vegetable peeler and shave some chocolate off a dark chocolate bar.

Want to save this recipe for later?

Enter your email address and I'll send it straight to your inbox. You'll also receive new recipes from me regularly!

Nutrition Facts per Serving

Calories: 392kcal | Carbohydrates: 41g | Protein: 9g | Fat: 24g | Saturated Fat: 7g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 6g | Trans Fat: 0.01g | Cholesterol: 80mg | Sodium: 192mg | Potassium: 236mg | Fiber: 4g | Sugar: 32g | Vitamin A: 336IU | Vitamin C: 2mg | Calcium: 118mg | Iron: 2mg

Disclaimer

Nutrition information is an estimate only and will vary depending on the substitutions made and the brands used.

Did you make this recipe or have any questions?

I love reading your comments and addressing your questions, so please leave your comments and ratings or questions below!

More Desserts

  • Whipped cream cheese frosting piped on top of a chocolate cupcake.
    Whipped Cream Cheese Frosting
  • Blueberry breakfast bars on brown parchment paper.
    Blueberry Breakfast Bars
  • A lemon poppy seed cupcake with some removed to show the lemon curd filling inside.
    Almond Flour Lemon Poppy Seed Cupcakes
  • Close up of slices of almond flour chocolate marble loaf on brown parchment paper.
    Almond Flour Chocolate Marble Loaf
  • Facebook
  • Threads
  • WhatsApp

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




This site uses Akismet to reduce spam. Learn how your comment data is processed.

Image of Leanne Combden

Welcome!

Hey there! I'm Leanne and welcome to Crumb Top Baking. I'm a self-taught baker, home cook and food photographer, and I'm passionate about sharing well-tested, simple and approachable desserts and savory recipes

More about me

Popular Recipes

  • Air fryer baby potatoes served in a white bowl and topped with sea salt and chopped fresh parsley.
    Air Fryer Baby Potatoes (Just 4 Ingredients!)
  • Air fryer tortilla chips served on a round platter with salsa and guacamole on the side.
    Homemade Air Fryer Tortilla Chips (with Corn or Flour Tortillas)
  • Caesar salad dressing in a glass jar.
    Caesar Salad Dressing without Eggs or Anchovies
  • Ground beef fajitas with toppings arranged on a platter.
    Ground Beef Fajitas with Homemade Fajita Seasoning
  • Side view of half an almond flour cupcake on a cupcake liner.
    Vanilla Almond Flour Cupcakes
  • A slice of eggless banana cake topped with cream cheese frosting being removed from the cake platter.
    Easy and Moist Eggless Banana Cake Recipe

Summer Recipes

  • Overhead of stone fruit salad in a grey bowl with vinaigrette and other toppings on the side.
    Stone Fruit Salad with Mint Honey Vinaigrette
  • Cherry chia pudding served in a glass on a white coaster with a spoon inserted into the pudding.
    Cherry Chia Pudding (Dairy-Free, Gluten-Free)
  • Italian bow tie pasta salad in a large bowl with wooden salad servers.
    Italian Bow Tie Pasta Salad
  • Side view of a slice of almond flour strawberry cake on a white plate with pieces of cake in the background.
    Almond Flour Strawberry Cake with Strawberry Frosting
  • Slices of almond flour lemon blueberry bread topped with glaze and arranged on white parchment paper.
    Almond Flour Lemon Blueberry Bread
  • Greek orzo pasta salad in a white bowl with wooden salad servers and feta, lemon dressing and parsley on the side.
    Greek Orzo Pasta Salad with Lemon Vinaigrette

Footer

↑ back to top

About

  • About Leanne
  • Privacy Policy
  • Contact

Newsletter

  • Sign Up! for emails and updates

Recipes

  • All Recipes
  • Air Fryer Recipes
  • Almond Flour Recipes

Copyright © 2026 Crumb Top Baking

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required